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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36571143_36571232_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36571143 - 36571232
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTCTCGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
GGCTCCGTCACC
Flanking Amino Acid:
TFPLRIKLTLVPITLGVFLN
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
50
0
1.2
54.6
40.8
Major PPT
71.6
0.49
0.8
65.1
30.6
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
47
-0.2
2.4
59.5
45.4

Associated Gene:

Gene:
SLC35E3
Ensembl Gene ID:
ENSAPLG00000011368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011842
36570649 - 36574440
3792