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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36572685_36573649_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36572685 - 36573649
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTCTGTTAATC
Flanking Amino Acid:
IFGPWTLSAVIMVLLSGVIA
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73
0.52
0.9
65.9
39.7
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
54.4
0.12
2
68
37.8

Associated Gene:

Gene:
SLC35E3
Ensembl Gene ID:
ENSAPLG00000011368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011842
36570649 - 36574440
3792