About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36593327_36594542_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36593327 - 36594542
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTGTTCTAAAGT
Flanking Amino Acid:
CRNLVAINQQDCTLADTPEV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
51.8
0.14
2
70.44
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011633
36592189 - 36601114
8926