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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36594611_36594739_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36594611 - 36594739
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACTT
Flanking Amino Acid:
FQLEKENVLKESMQELEEKQ
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.2
0.55
1
74.4
39.3
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
67.9
0.64
1.9
89.07
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011633
36592189 - 36601114
8926