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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36599046_36600544_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36599046 - 36600544
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TAATTTACTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AAACCTTTAATT
Flanking Amino Acid:
FNEDPEISLADYWKCPECSE
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
64.8
0.33
1.1
62.2
43
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
67.7
0.63
1.2
74.19
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011164
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011633
36592189 - 36601114
8926