Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36609812_36610685_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36609812 - 36610685

Intron Length:

874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTACTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTTATTTTACT

Flanking Amino Acid:

TNGYSWYQLEGGMQDYNYVW

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.5

40.6

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

79.5

0.66

83.6

31.3

Minor 5ss

36.6

-1.5

41.4

44.7

Minor BPS

67.8

0.64

1.8

89.13

35.2

Associated Gene:

Gene:

CPM

Ensembl Gene ID:

ENSAPLG00000011100

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046420

36607046 - 36637763

30718

ENSAPLT00000011572

36573855 - 36637763

63909