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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36610857_36611123_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36610857 - 36611123
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTC
Flanking Amino Acid:
ASYTFDNGNSVTGSSKGYSR
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.2
0.81
0.7
80.9
30.7
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
59.4
0.27
1.6
65.28
41.5

Associated Gene:

Gene:
CPM
Ensembl Gene ID:
ENSAPLG00000011100
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046420
36607046 - 36637763
30718
ENSAPLT00000011572
36573855 - 36637763
63909