Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36612672_36619005_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36612672 - 36619005

Intron Length:

6334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

GCTTCTTTTACA

Flanking Amino Acid:

KYVANMHGDETVGREILLHL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

82.3

32.2

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

85.4

0.8

79.4

32.6

Minor 5ss

43.4

-0.7

3.1

60.6

44.5

Minor BPS

65.7

0.49

1.6

71.79

40.2

Associated Gene:

Gene:

CPM

Ensembl Gene ID:

ENSAPLG00000011100

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046420

36607046 - 36637763

30718

ENSAPLT00000011572

36573855 - 36637763

63909