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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36678199_36685290_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36678199 - 36685290
Intron Length:
7092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GAATGTTAAACT
Flanking Amino Acid:
YADVGEEFNQEAEYGGHDQI
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.2
37.3
Major BPS
80
0.75
1
78.6
31
Major PPT
83.8
0.76
0.8
82.4
34
Minor 5ss
32.5
-2
3.3
43.8
43.7
Minor BPS
48.6
-0
2.1
66.51
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023649
36677990 - 36702370
24381
ENSAPLT00000011341
36677990 - 36702370
24381