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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3667901_3669769_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3667901 - 3669769
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTCTCTGTATTT
Flanking Amino Acid:
KLGHLESFMQRSTSDWGYVE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
49.8
0.06
2.2
74.81
43.2

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029405
3667386 - 3689761
22376