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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36685501_36687384_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36685501 - 36687384
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAACT
Flanking Amino Acid:
IALYIGNLTWWTTDEDLTEA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80.9
0.7
0.9
77.8
40.4
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
73.6
0.82
1.6
89.66
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023649
36677990 - 36702370
24381
ENSAPLT00000011341
36677990 - 36702370
24381