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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36690860_36692111_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36690860 - 36692111
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATATATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGTCATTAATT
Flanking Amino Acid:
YDRGDYGPPGRRFTGNNMPI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.5
0.49
0.9
66.3
39
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
75.9
0.89
1.5
89.19
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023649
36677990 - 36702370
24381