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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36690860_36693164_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36690860 - 36693164
Intron Length:
2305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTCTTAATC
Flanking Amino Acid:
YDRGDYGPPGREMDAARTPL
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.8
0.78
0.8
82.3
34.2
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
82.5
1
0.9
84.27
27.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011341
36677990 - 36702370
24381