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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3669806_3670307_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3669806 - 3670307
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTTTTGTCAATT
Flanking Amino Acid:
TSDWGYVEDLVEDDDKIGLY
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
77.3
0.62
0.9
70.4
39.1
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
51.6
0.13
2.2
76.39
40.7

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029405
3667386 - 3689761
22376
ENSAPLT00000024909
3663133 - 3689761
26629
ENSAPLT00000008921
3663109 - 3689761
26653