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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3670481_3670989_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3670481 - 3670989
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GTTTCTTTTACA
Flanking Amino Acid:
PKGAFIDNFTMDVNGITFTS
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.8
34.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.7
0.6
0.8
69.7
36.4
Minor 5ss
39.9
-1.1
2.9
56.1
41.4
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024909
3663133 - 3689761
26629
ENSAPLT00000008921
3663109 - 3689761
26653
ENSAPLT00000029405
3667386 - 3689761
22376