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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36724719_36724795_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36724719 - 36724795
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TCTCCCCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TTAGTGATAACA
Flanking Amino Acid:
TVVSEFYDEMIFQDPTAMMQ
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
68.7
0.42
0.8
67.7
27.5
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
46.4
-0.2
2.3
64.46
41.9

Associated Gene:

Gene:
YEATS4
Ensembl Gene ID:
ENSAPLG00000013248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013806
36723088 - 36727094
4007