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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3677692_3678619_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3677692 - 3678619
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
GTGTATCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TTTTGTGTATCT
Flanking Amino Acid:
VLVSDGDPTVGELKLTTIQK
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
60.6
0.24
1.1
59.7
40.6
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
47.8
-0
2.5
79.06
43.7

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024909
3663133 - 3689761
26629
ENSAPLT00000008921
3663109 - 3689761
26653
ENSAPLT00000029405
3667386 - 3689761
22376