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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3678802_3679796_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3678802 - 3679796
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCATTTC
5'SS Class:
major
3'SS Sequence:
TCTCCCATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
AGACTCATATCT
Flanking Amino Acid:
GNQETSAQMKKFYNQVSTPL
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
71.8
34.4
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
76.4
0.6
0.8
73.6
29.7
Minor 5ss
37.6
-1.4
3.2
52.1
45.1
Minor BPS
46.4
-0.1
1.8
62.66
40.6

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029405
3667386 - 3689761
22376
ENSAPLT00000024909
3663133 - 3689761
26629
ENSAPLT00000008921
3663109 - 3689761
26653