About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36802310_36802393_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36802310 - 36802393
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAACT
Flanking Amino Acid:
NTGMDTDKIKIFGSRVRVDS
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.8
0.6
0.9
76.8
37.4
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
84.4
1.16
0.9
93.73
26.7

Associated Gene:

Gene:
CCT2
Ensembl Gene ID:
ENSAPLG00000013136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013735
36797007 - 36809000
11994