About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36803992_36805754_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36803992 - 36805754
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGGA
5'SS Class:
major
3'SS Sequence:
CTCACATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTCAATAATC
Flanking Amino Acid:
AGVERLALVTGGEIASTFDH
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
66.2
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
71.8
0.49
0.9
65.7
34.8
Minor 5ss
34.5
-1.8
2.9
41.6
44.9
Minor BPS
54
0.1
1.9
67.04
38.4

Associated Gene:

Gene:
CCT2
Ensembl Gene ID:
ENSAPLG00000013136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013735
36797007 - 36809000
11994