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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36805875_36806507_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36805875 - 36806507
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGAATTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTGTTATAAAT
Flanking Amino Acid:
KLIHFSGVAMGEACTIVLRG
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
75.9
0.58
0.9
73.8
41.4
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
54.2
0.21
1.8
77.39
39.2

Associated Gene:

Gene:
CCT2
Ensembl Gene ID:
ENSAPLG00000013136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013735
36797007 - 36809000
11994