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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36806637_36806724_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36806637 - 36806724
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTGTCTTTAATG
Flanking Amino Acid:
VKDTRTVYGGGCSEMLMANA
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
63
0.29
1
59.1
40.6
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
77
0.71
1.2
74.76
38.2

Associated Gene:

Gene:
CCT2
Ensembl Gene ID:
ENSAPLG00000013136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013735
36797007 - 36809000
11994