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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36806829_36807699_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36806829 - 36807699
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TCTGCATTAATG
Flanking Amino Acid:
MESFAKALRMIPTIIADNAG
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
70.1
0.45
0.8
67
35.5
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
58.9
0.14
1.8
64.07
44.2

Associated Gene:

Gene:
CCT2
Ensembl Gene ID:
ENSAPLG00000013136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013735
36797007 - 36809000
11994