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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3680990_3681561_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3680990 - 3681561
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTT
Flanking Amino Acid:
YLTVNQMLAERNTAPTAALK
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.5
0.51
0.9
66.4
34.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
53.6
0.19
1.7
70.13
42.3

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024909
3663133 - 3689761
26629
ENSAPLT00000008921
3663109 - 3689761
26653
ENSAPLT00000029405
3667386 - 3689761
22376