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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3681735_3685912_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3681735 - 3685912
Intron Length:
4178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
CTTATCACACCT
Flanking Amino Acid:
PKDPRRGCCSVDNDPHFIIY
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
78.3
0.7
1
80
32.1
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
44
-0.3
2
65.4
44.9

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024909
3663133 - 3689761
26629