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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36817978_36818132_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36817978 - 36818132
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
VYIPFAVAVERVPLIRFKSI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.6
0.58
0.9
72.5
37.6
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013049
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013609
36817922 - 36825731
7810