About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36818311_36819911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36818311 - 36819911
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TAGGGCTGACCA
Flanking Amino Acid:
ASERLYDYMNAQYYGVVSVG
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
68
0.41
0.8
58.1
33.2
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
42.8
-0.5
2.1
52.92
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013049
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013609
36817922 - 36825731
7810