Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36821057_36821698_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36821057 - 36821698

Intron Length:

642

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

GTTCTGCTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

TCTCTGCTAACG

Flanking Amino Acid:

EEPVFSFYLKRGDDTENGGE

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

1.2

81.8

38.5

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

79.1

0.66

0.9

69.5

41.7

Minor 5ss

35.6

-1.6

50.5

45.8

Minor BPS

45.3

-0.4

2.3

56.84

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013609

36817922 - 36825731

7810