About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36822644_36824487_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36822644 - 36824487
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GCATTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
CATTCCTCACAG
Flanking Amino Acid:
IGASPSHTGEYLVDCRRLSS
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
71.8
0.49
0.9
64.8
36.3
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
47.3
-0.3
2
54.18
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013049
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013609
36817922 - 36825731
7810