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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36833364_36836189_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36833364 - 36836189
Intron Length:
2826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CCTCCATTCACA
Flanking Amino Acid:
QFFFYAGWLKVAEQLINPFG
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
67.8
0.44
1
75
30.1
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
48.8
-0.1
2.1
61.69
44.3

Associated Gene:

Gene:
BEST3
Ensembl Gene ID:
ENSAPLG00000012990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013543
36829052 - 36845601
16550