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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36836816_36837525_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36836816 - 36837525
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCCTTCCCATTC
Flanking Amino Acid:
DSVDLQTLMNEMNKYRSWCS
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.6
0.6
0.8
73.7
30.2
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
41.9
-0.6
1.9
50.19
41.2

Associated Gene:

Gene:
BEST3
Ensembl Gene ID:
ENSAPLG00000012990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013543
36829052 - 36845601
16550