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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3684378_3685912_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3684378 - 3685912
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
CTTATCACACCT
Flanking Amino Acid:
PPVSAVSINRVDNDPHFIIY
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
78.3
0.7
1
80
32.1
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
44
-0.3
2
65.4
44.9

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029405
3667386 - 3689761
22376
ENSAPLT00000008921
3663109 - 3689761
26653