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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36877024_36877385_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36877024 - 36877385
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTTGACT
Flanking Amino Acid:
EKQLKEAQGKIDVLQAEVAA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
1
79.5
37.9
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
72
0.77
1.7
90.81
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041596
36861025 - 36889041
28017
ENSAPLT00000027472
36861025 - 36889041
28017
ENSAPLT00000013447
36866431 - 36889343
22913