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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36877590_36880333_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36877590 - 36880333
Intron Length:
2744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGGTACTTGATT
Flanking Amino Acid:
MQPIVKDCKEADLSLYNEFR
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.9
0.65
0.9
76.9
37.3
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
64.2
0.53
1.5
76.75
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041596
36861025 - 36889041
28017
ENSAPLT00000027472
36861025 - 36889041
28017
ENSAPLT00000013447
36866431 - 36889343
22913