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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36880463_36882715_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36880463 - 36882715
Intron Length:
2253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GCTTTCTTAATT
Flanking Amino Acid:
FPCLTFSKSELASAVLEAVE
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
75.1
41.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
40.5
-1.1
3.1
57.9
46.4
Minor BPS
78
0.96
1.1
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041596
36861025 - 36889041
28017
ENSAPLT00000027472
36861025 - 36889041
28017
ENSAPLT00000013447
36866431 - 36889343
22913