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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36882829_36886193_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36882829 - 36886193
Intron Length:
3365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTATATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTATTAAAT
Flanking Amino Acid:
KASAVECGGPKKCALSGQSK
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
75.7
29.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.9
0.72
0.8
77.6
36.1
Minor 5ss
47.3
-0.3
2.5
57.4
41.7
Minor BPS
65.7
0.57
1.7
83.28
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027472
36861025 - 36889041
28017
ENSAPLT00000013447
36866431 - 36889343
22913
ENSAPLT00000041596
36861025 - 36889041
28017