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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36886294_36886384_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36886294 - 36886384
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATATTGTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATAT
Flanking Amino Acid:
YYISPFCRYRITSVCNFFTY
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.8
0.58
1
73.2
41.6
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
57.2
0.3
1.9
82.2
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041596
36861025 - 36889041
28017
ENSAPLT00000027472
36861025 - 36889041
28017
ENSAPLT00000013447
36866431 - 36889343
22913