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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3689166_3689613_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3689166 - 3689613
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACATA
5'SS Class:
major
3'SS Sequence:
CTCTTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
CTGACCTTCATT
Flanking Amino Acid:
EVKGNKLTVTRGLQKDYRTD
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
71.3
40.5
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
81.2
0.7
0.7
75.6
26.6
Minor 5ss
40.9
-1
3.3
56.7
47.6
Minor BPS
57
0.3
1.8
72.09
45.3

Associated Gene:

Gene:
ITIH2
Ensembl Gene ID:
ENSAPLG00000008497
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029405
3667386 - 3689761
22376
ENSAPLT00000024909
3663133 - 3689761
26629
ENSAPLT00000008921
3663109 - 3689761
26653