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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36909572_36910652_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36909572 - 36910652
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
KFYLKVFGIRVESPNQTIAI
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
1.1
91.4
26.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.8
0.76
0.8
81.8
28.7
Minor 5ss
30.9
-2.2
3.9
43.1
43.9
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131