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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36912133_36912703_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36912133 - 36912703
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTG
5'SS Class:
major
3'SS Sequence:
AATTTCAAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCATTAAAT
Flanking Amino Acid:
RKKGKPNPDQRYFMLVVGLY
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
65
41.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
59.6
0.22
1
58.5
41.3
Minor 5ss
46.5
-0.4
3.1
64.1
47.4
Minor BPS
71
0.74
1.7
86.72
38.6

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131