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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36917752_36921781_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36917752 - 36921781
Intron Length:
4030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TGTACTGTATCT
Flanking Amino Acid:
KIENFLMVDKDQIFMENVGA
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
48.3
-0
2.2
73.19
43.7

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131