About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36921946_36922541_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36921946 - 36922541
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCTG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTCTCTCTTACA
Flanking Amino Acid:
KSTISGGSTVSGCSRATSLL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
65.3
46
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
49.5
-0
2.5
67.2
43.9
Minor BPS
55
0.15
2
71.9
40.1

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131