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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36922606_36923748_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36922606 - 36923748
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTAATTTGACC
Flanking Amino Acid:
RKSAQLKSSKVCLSKRKKSC
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
56.9
0.2
1.6
67.22
38.6

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131