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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36923835_36924629_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36923835 - 36924629
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
ATCTACAGAATA
Flanking Amino Acid:
IIALVAIMALCALTISTLYV
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
70.8
39.2
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
88.5
0.87
0.6
83.5
24.9
Minor 5ss
41.8
-0.9
2.9
56.5
41.8
Minor BPS
47.3
-0.2
1.9
60.89
38.8

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131