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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36924702_36924806_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36924702 - 36924806
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTTCTTAATA
Flanking Amino Acid:
DRHFEKHPISSASTSSVVIF
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.7
0.8
0.8
86.3
26.4
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
81.6
0.99
1
83.67
30.1

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131