About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3692522_3693979_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3692522 - 3693979
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATTTCTTACAC
Flanking Amino Acid:
KFSATIIIDSGPLKGRRVEG
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
85.4
0.8
0.8
77.1
41.6
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
61.9
0.35
1.7
72.44
38.3

Associated Gene:

Gene:
KIN
Ensembl Gene ID:
ENSAPLG00000008247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008591
3692459 - 3705860
13402