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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36932223_36933401_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36932223 - 36933401
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAGAT
U12 Branch Point Sequence:
TTTTTCTTGAAG
Flanking Amino Acid:
PVDVEISLEINTTEPLIVFL
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
53.6
0.09
1.3
52.7
43.2
Major PPT
84.8
0.78
0.9
87.3
23.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
70.3
0.49
1.5
75.29
36.5

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131