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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36933511_36936065_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36933511 - 36936065
Intron Length:
2555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCTCATTTATCA
Flanking Amino Acid:
NGKDFLETTQGRQHIWTLPV
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
72
0.5
0.9
64
42.2
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
52
0.06
1.8
65.52
41

Associated Gene:

Gene:
MYRFL
Ensembl Gene ID:
ENSAPLG00000012837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013373
36909376 - 36936506
27131