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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3694081_3694321_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3694081 - 3694321
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTCTCACTT
Flanking Amino Acid:
THLETVIPAPGKKVMVLNGG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
66.1
45.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.9
0.79
0.7
82.5
27.7
Minor 5ss
40.5
-1.1
3.3
55.3
48.9
Minor BPS
56.9
0.29
1.8
76.85
40.1

Associated Gene:

Gene:
KIN
Ensembl Gene ID:
ENSAPLG00000008247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008591
3692459 - 3705860
13402