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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3694422_3695480_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3694422 - 3695480
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CCTTTCACAACA
Flanking Amino Acid:
KYHKKKGVVKEVIDKYTAVV
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
71.7
0.49
0.9
66.7
32.8
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
50.1
0
1.9
63.87
42.6

Associated Gene:

Gene:
KIN
Ensembl Gene ID:
ENSAPLG00000008247
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008591
3692459 - 3705860
13402